I have no idea what could be causing what.
Think about your purchase over for a while.
I bought a TORS removal kit and one year later, bought the 2 into 1. Theres nothing worse than buying stuff, then having it become obsolete in a short time.
If you think you can afford it, Id get the Trinity. You'll be getting rid of a ton of junk, minimizing your setup, dealing with one carb and you get a brand new airfilter. My 35mm's both plugged right into my system without any adjustments. I bolted it up and haven't touvhed it since. It's really easy to install to. Paying a mechanic is SO expensive.
Both bikes have pipes and Vforce.