If you are going with 16/40 gearing and can pull it you wont want any more top end. Depending on the porting you may need bigger carbs (all depends on how much the port job can flow). There are all kinds of things you can do in the tranny, forks, straight cut gears, bearings on the shift shaft, bearings on the shift drum, remove dogs from gears, heavy duty bearings, port match the cases, etch the crank chamber, the list goes on. I run a "close ratio" 6th gear which is a little shorter then stock (closer ratio to fifth) not sure if you can find a taller one or not. But like I said, with 16/40 I don't think you'll be looking to go any faster if you can pull it!
Sp